J4_8UVR_001

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8UVR|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UVR_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0454

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8UVR|1|1A|C|268
8UVR|1|1A|U|269
*
8UVR|1|1A|G|370
8UVR|1|1A|A|371
8UVR|1|1A|G|372
8UVR|1|1A|U|373
8UVR|1|1A|A|374
8UVR|1|1A|C|375
*
8UVR|1|1A|G|399
8UVR|1|1A|G|400
8UVR|1|1A|A|401
8UVR|1|1A|A|402
8UVR|1|1A|U|403
8UVR|1|1A|C|404
8UVR|1|1A|U|405
8UVR|1|1A|G|406
*
8UVR|1|1A|U|421
8UVR|1|1A|A|422
8UVR|1|1A|A|423
8UVR|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9