J4_8UVR_028

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UVR_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.116

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8UVR|1|2a|G|142
8UVR|1|2a|A|143
8UVR|1|2a|G|144
*
8UVR|1|2a|C|178
8UVR|1|2a|A|179
8UVR|1|2a|U|180
8UVR|1|2a|G|181
8UVR|1|2a|U|182
8UVR|1|2a|G|183
*
8UVR|1|2a|C|194
8UVR|1|2a|A|195
8UVR|1|2a|A|196
8UVR|1|2a|A|197
8UVR|1|2a|G|198
*
8UVR|1|2a|C|219
8UVR|1|2a|G|220
8UVR|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20