J4_8UVS_028

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UVS_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1132

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8UVS|1|2a|G|142
8UVS|1|2a|A|143
8UVS|1|2a|G|144
*
8UVS|1|2a|C|178
8UVS|1|2a|A|179
8UVS|1|2a|U|180
8UVS|1|2a|G|181
8UVS|1|2a|U|182
8UVS|1|2a|G|183
*
8UVS|1|2a|C|194
8UVS|1|2a|A|195
8UVS|1|2a|A|196
8UVS|1|2a|A|197
8UVS|1|2a|G|198
*
8UVS|1|2a|C|219
8UVS|1|2a|G|220
8UVS|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20