J4_8UXA_009
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGA*UUAAAA*UAGUAAACUAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8UXA|1|AL|A|880, 8UXA|1|AL|C|882, 8UXA|1|AL|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UXA_009 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1406
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UXA|1|AL|G|684
8UXA|1|AL|G|685
8UXA|1|AL|A|686
*
8UXA|1|AL|U|829
8UXA|1|AL|U|830
8UXA|1|AL|A|831
8UXA|1|AL|A|832
8UXA|1|AL|A|833
8UXA|1|AL|A|834
*
8UXA|1|AL|U|875
8UXA|1|AL|A|876
8UXA|1|AL|G|877
8UXA|1|AL|U|878
8UXA|1|AL|A|879
8UXA|1|AL|A|880
8UXA|1|AL|A|881
8UXA|1|AL|C|882
8UXA|1|AL|U|883
8UXA|1|AL|A|884
8UXA|1|AL|U|885
8UXA|1|AL|G|886
*
8UXA|1|AL|C|944
8UXA|1|AL|C|945
Current chains
- Chain AL
- Small ribosomal subunit rRNA
Nearby chains
- Chain AA
- Small ribosomal subunit protein mS38
- Chain n
- 37S ribosomal protein S8, mitochondrial
- Chain r
- Small ribosomal subunit protein uS12m
- Chain u
- Small ribosomal subunit protein uS15m
- Chain w
- 37S ribosomal protein S17, mitochondrial
- Chain z
- Small ribosomal subunit protein bS21m
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