J4_8V87_001
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8V87|1|1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8V87_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1309
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8V87|1|1|U|112
8V87|1|1|C|113
*
8V87|1|1|G|267
8V87|1|1|A|268
8V87|1|1|G|269
8V87|1|1|U|270
8V87|1|1|C|271
8V87|1|1|G|272
*
8V87|1|1|C|293
8V87|1|1|U|294
8V87|1|1|A|295
8V87|1|1|A|296
8V87|1|1|G|297
8V87|1|1|U|298
8V87|1|1|G|299
*
8V87|1|1|U|316
8V87|1|1|A|317
8V87|1|1|A|318
8V87|1|1|A|319
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- Ribosome biogenesis protein BRX1
- Chain D
- ATP-dependent RNA helicase HAS1
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- Large ribosomal subunit protein eL15A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
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