J4_8V9K_005

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GGUGAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

8V9K|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8V9K_005 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1065

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8V9K|1|A|U|1428
8V9K|1|A|C|1429
*
8V9K|1|A|G|1453
8V9K|1|A|G|1454
8V9K|1|A|U|1455
8V9K|1|A|G|1456
8V9K|1|A|A|1457
8V9K|1|A|G|1458
*
8V9K|1|A|C|1519
8V9K|1|A|C|1520
*
8V9K|1|A|G|1815
8V9K|1|A|C|1816
8V9K|1|A|C|1817
8V9K|1|A|C|1818
8V9K|1|A|G|1819
8V9K|1|A|U|1820
8V9K|1|A|A|1821

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23