J4_8VFT_005

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

8VFT|1|5|A|2366, 8VFT|1|5|U|2369, 8VFT|1|5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VFT|1|5|OMC|2365
8VFT|1|5|A|2366
8VFT|1|5|A|2367
8VFT|1|5|A|2368
8VFT|1|5|U|2369
8VFT|1|5|A|2370
8VFT|1|5|U|2371
*
8VFT|1|5|A|2389
8VFT|1|5|G|2390
8VFT|1|5|G|2391
*
8VFT|1|5|OMC|2824
8VFT|1|5|A|2825
8VFT|1|5|U|2826
8VFT|1|5|G|2827
8VFT|1|5|U|2828
8VFT|1|5|U|2829
*
8VFT|1|5|A|3856
8VFT|1|5|G|3857

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31