J4_8VFT_008
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VFT_008 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.0961
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VFT|1|5|G|3634
8VFT|1|5|A|3635
8VFT|1|5|C|3636
8VFT|1|5|U|3637
8VFT|1|5|G|3638
*
8VFT|1|5|C|3650
8VFT|1|5|A|3651
8VFT|1|5|A|3652
8VFT|1|5|A|3653
8VFT|1|5|G|3654
*
8VFT|1|5|U|3690
8VFT|1|5|G|3691
8VFT|1|5|A|3692
8VFT|1|5|U|3693
8VFT|1|5|U|3694
*
8VFT|1|5|A|3821
8VFT|1|5|U|3822
8VFT|1|5|G|3823
8VFT|1|5|A|3824
8VFT|1|5|A2M|3825
8VFT|1|5|C|3826
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- uL2
- Chain n
- eL41
- Chain p
- eL43
Coloring options: