J4_8VFT_014
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8VFT|1|9|A|672, 8VFT|1|9|A|1083, 8VFT|1|9|C|1085, 8VFT|1|9|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VFT_014 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1173
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VFT|1|9|A|671
8VFT|1|9|A|672
8VFT|1|9|G|673
*
8VFT|1|9|C|1032
8VFT|1|9|G|1033
8VFT|1|9|A|1034
8VFT|1|9|A|1035
8VFT|1|9|A|1036
8VFT|1|9|G|1037
*
8VFT|1|9|C|1078
8VFT|1|9|C|1079
8VFT|1|9|A|1080
8VFT|1|9|PSU|1081
8VFT|1|9|A|1082
8VFT|1|9|A|1083
8VFT|1|9|A|1084
8VFT|1|9|C|1085
8VFT|1|9|G|1086
8VFT|1|9|A|1087
8VFT|1|9|U|1088
8VFT|1|9|G|1089
*
8VFT|1|9|U|1160
8VFT|1|9|U|1161
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- uS17
- Chain NN
- uS15
- Chain OO
- uS11
- Chain WW
- uS8
- Chain XX
- uS12
- Chain aa
- eS26
- Chain n
- eL41
- Chain p
- eL43
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