J4_8VIO_005

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8VIO|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VIO_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1006

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8VIO|1|A|G|1425
8VIO|1|A|G|1426
8VIO|1|A|U|1427
8VIO|1|A|U|1428
8VIO|1|A|C|1429
*
8VIO|1|A|G|1453
8VIO|1|A|G|1454
8VIO|1|A|U|1455
8VIO|1|A|G|1456
8VIO|1|A|A|1457
8VIO|1|A|G|1458
*
8VIO|1|A|C|1519
8VIO|1|A|C|1520
*
8VIO|1|A|G|1815
8VIO|1|A|C|1816
8VIO|1|A|C|1817
8VIO|1|A|C|1818
8VIO|1|A|G|1819
8VIO|1|A|U|1820
8VIO|1|A|A|1821
8VIO|1|A|C|1822

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain d

50S ribosomal protein L34