J4_8VIO_008

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VIO_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0756

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VIO|1|A|G|1989
8VIO|1|A|A|1990
8VIO|1|A|C|1991
8VIO|1|A|U|1992
8VIO|1|A|G|1993
*
8VIO|1|A|C|2005
8VIO|1|A|A|2006
8VIO|1|A|C|2007
8VIO|1|A|A|2008
8VIO|1|A|G|2009
*
8VIO|1|A|U|2044
8VIO|1|A|G|2045
8VIO|1|A|A|2046
8VIO|1|A|C|2047
*
8VIO|1|A|G|2199
8VIO|1|A|U|2200
8VIO|1|A|A|2201
8VIO|1|A|A|2202
8VIO|1|A|C|2203

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

Conserved domain protein

Chain C

50S ribosomal protein L2