J4_8VKI_004

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8VKI|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VKI_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.104

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8VKI|1|A|G|1425
8VKI|1|A|G|1426
8VKI|1|A|U|1427
8VKI|1|A|U|1428
8VKI|1|A|C|1429
*
8VKI|1|A|G|1453
8VKI|1|A|G|1454
8VKI|1|A|U|1455
8VKI|1|A|G|1456
8VKI|1|A|A|1457
8VKI|1|A|G|1458
*
8VKI|1|A|C|1519
8VKI|1|A|C|1520
*
8VKI|1|A|G|1815
8VKI|1|A|C|1816
8VKI|1|A|C|1817
8VKI|1|A|C|1818
8VKI|1|A|G|1819
8VKI|1|A|U|1820
8VKI|1|A|A|1821
8VKI|1|A|C|1822

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain d

50S ribosomal protein L34