J4_8VKI_008
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 8VKI|1|A|A|2512
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VKI_008 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1094
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VKI|1|A|C|2509
8VKI|1|A|A|2510
8VKI|1|A|A|2511
8VKI|1|A|A|2512
8VKI|1|A|G|2513
*
8VKI|1|A|U|2567
8VKI|1|A|U|2568
8VKI|1|A|G|2569
8VKI|1|A|A|2570
8VKI|1|A|C|2571
*
8VKI|1|A|G|2594
8VKI|1|A|G|2595
8VKI|1|A|G|2596
*
8VKI|1|A|C|2605
8VKI|1|A|G|2606
8VKI|1|A|G|2607
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain P
- 50S Ribosomal Protein L18
- Chain X
- 50S ribosomal protein L27
- Chain c
- 50S Ribosomal Protein L33
- Chain e
- 50S ribosomal protein L35
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