J4_8VKV_004

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8VKV|1|D|C|183, 8VKV|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|D|G|142
8VKV|1|D|A|143
8VKV|1|D|G|144
*
8VKV|1|D|C|178
8VKV|1|D|A|179
8VKV|1|D|U|180
8VKV|1|D|A|181
8VKV|1|D|A|182
8VKV|1|D|C|183
8VKV|1|D|G|184
*
8VKV|1|D|C|193
8VKV|1|D|C|194
8VKV|1|D|A|195
8VKV|1|D|A|196
8VKV|1|D|A|197
8VKV|1|D|G|198
*
8VKV|1|D|U|219
8VKV|1|D|G|220
8VKV|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20