J4_8VKV_005

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8VKV|1|D|C|576, 8VKV|1|D|A|815, 8VKV|1|D|C|817, 8VKV|1|D|A|819

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|D|G|575
8VKV|1|D|C|576
8VKV|1|D|G|577
*
8VKV|1|D|C|764
8VKV|1|D|G|765
8VKV|1|D|A|766
8VKV|1|D|A|767
8VKV|1|D|A|768
8VKV|1|D|G|769
*
8VKV|1|D|C|810
8VKV|1|D|C|811
8VKV|1|D|G|812
8VKV|1|D|U|813
8VKV|1|D|A|814
8VKV|1|D|A|815
8VKV|1|D|A|816
8VKV|1|D|C|817
8VKV|1|D|G|818
8VKV|1|D|A|819
8VKV|1|D|U|820
8VKV|1|D|G|821
*
8VKV|1|D|C|879
8VKV|1|D|C|880

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain N

30S ribosomal protein S8

Chain R

30S ribosomal protein S12

Chain T

Small ribosomal subunit protein uS15

Chain V

30S ribosomal protein S17