J4_8VKV_006

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8VKV|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|a|C|268
8VKV|1|a|C|269
*
8VKV|1|a|G|370
8VKV|1|a|A|371
8VKV|1|a|G|372
8VKV|1|a|U|373
8VKV|1|a|A|374
8VKV|1|a|G|375
*
8VKV|1|a|U|399
8VKV|1|a|G|400
8VKV|1|a|A|401
8VKV|1|a|A|402
8VKV|1|a|U|403
8VKV|1|a|A|404
8VKV|1|a|U|405
8VKV|1|a|G|406
*
8VKV|1|a|C|421
8VKV|1|a|A|422
8VKV|1|a|A|423
8VKV|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9