J4_8VKV_008

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8VKV|1|a|U|653, 8VKV|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|a|C|601
8VKV|1|a|A|602
8VKV|1|a|A|603
8VKV|1|a|G|604
*
8VKV|1|a|C|624
8VKV|1|a|G|625
8VKV|1|a|A|626
8VKV|1|a|A|627
8VKV|1|a|G|628
*
8VKV|1|a|C|635
8VKV|1|a|G|636
8VKV|1|a|A|637
8VKV|1|a|G|638
*
8VKV|1|a|C|650
8VKV|1|a|G|651
8VKV|1|a|U|652
8VKV|1|a|U|653
8VKV|1|a|A|654
8VKV|1|a|A|655
8VKV|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15