J4_8VKV_013

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|a|A|1772
8VKV|1|a|A|1773
8VKV|1|a|C|1774
8VKV|1|a|U|1775
8VKV|1|a|G|1776
*
8VKV|1|a|C|1788
8VKV|1|a|A|1789
8VKV|1|a|C|1790
8VKV|1|a|A|1791
8VKV|1|a|G|1792
*
8VKV|1|a|U|1827
8VKV|1|a|G|1828
8VKV|1|a|A|1829
8VKV|1|a|C|1830
*
8VKV|1|a|G|1975
8VKV|1|a|U|1976
8VKV|1|a|A|1977
8VKV|1|a|A|1978
8VKV|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2