J4_8VKW_007

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VKW_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1124

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VKW|1|A|G|1989
8VKW|1|A|A|1990
8VKW|1|A|C|1991
8VKW|1|A|U|1992
8VKW|1|A|G|1993
*
8VKW|1|A|C|2005
8VKW|1|A|A|2006
8VKW|1|A|C|2007
8VKW|1|A|A|2008
8VKW|1|A|G|2009
*
8VKW|1|A|U|2044
8VKW|1|A|G|2045
8VKW|1|A|A|2046
8VKW|1|A|C|2047
*
8VKW|1|A|G|2199
8VKW|1|A|U|2200
8VKW|1|A|A|2201
8VKW|1|A|A|2202
8VKW|1|A|C|2203

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2