J4_8VOP_004

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8VOP|1|D|C|183, 8VOP|1|D|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|D|G|142
8VOP|1|D|A|143
8VOP|1|D|G|144
*
8VOP|1|D|C|178
8VOP|1|D|A|179
8VOP|1|D|U|180
8VOP|1|D|A|181
8VOP|1|D|A|182
8VOP|1|D|C|183
8VOP|1|D|G|184
*
8VOP|1|D|C|193
8VOP|1|D|C|194
8VOP|1|D|A|195
8VOP|1|D|A|196
8VOP|1|D|A|197
8VOP|1|D|G|198
*
8VOP|1|D|U|219
8VOP|1|D|G|220
8VOP|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20