J4_8VOP_005

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8VOP|1|D|C|576, 8VOP|1|D|A|815, 8VOP|1|D|C|817, 8VOP|1|D|A|819

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|D|G|575
8VOP|1|D|C|576
8VOP|1|D|G|577
*
8VOP|1|D|C|764
8VOP|1|D|G|765
8VOP|1|D|A|766
8VOP|1|D|A|767
8VOP|1|D|A|768
8VOP|1|D|G|769
*
8VOP|1|D|C|810
8VOP|1|D|C|811
8VOP|1|D|G|812
8VOP|1|D|U|813
8VOP|1|D|A|814
8VOP|1|D|A|815
8VOP|1|D|A|816
8VOP|1|D|C|817
8VOP|1|D|G|818
8VOP|1|D|A|819
8VOP|1|D|U|820
8VOP|1|D|G|821
*
8VOP|1|D|C|879
8VOP|1|D|C|880

Current chains

Chain D

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S8

Chain R

30S ribosomal protein S12

Chain T

Small ribosomal subunit protein uS15

Chain V

30S ribosomal protein S17