J4_8VOP_006

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8VOP|1|a|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|C|268
8VOP|1|a|C|269
*
8VOP|1|a|G|370
8VOP|1|a|A|371
8VOP|1|a|G|372
8VOP|1|a|U|373
8VOP|1|a|A|374
8VOP|1|a|G|375
*
8VOP|1|a|U|399
8VOP|1|a|G|400
8VOP|1|a|A|401
8VOP|1|a|A|402
8VOP|1|a|U|403
8VOP|1|a|A|404
8VOP|1|a|U|405
8VOP|1|a|G|406
*
8VOP|1|a|C|421
8VOP|1|a|A|422
8VOP|1|a|A|423
8VOP|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9