J4_8VOP_008

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8VOP|1|a|U|653, 8VOP|1|a|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|C|601
8VOP|1|a|A|602
8VOP|1|a|A|603
8VOP|1|a|G|604
*
8VOP|1|a|C|624
8VOP|1|a|G|625
8VOP|1|a|A|626
8VOP|1|a|A|627
8VOP|1|a|G|628
*
8VOP|1|a|C|635
8VOP|1|a|G|636
8VOP|1|a|A|637
8VOP|1|a|G|638
*
8VOP|1|a|C|650
8VOP|1|a|G|651
8VOP|1|a|U|652
8VOP|1|a|U|653
8VOP|1|a|A|654
8VOP|1|a|A|655
8VOP|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15