J4_8VOP_013

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|A|1772
8VOP|1|a|A|1773
8VOP|1|a|C|1774
8VOP|1|a|U|1775
8VOP|1|a|G|1776
*
8VOP|1|a|C|1788
8VOP|1|a|A|1789
8VOP|1|a|C|1790
8VOP|1|a|A|1791
8VOP|1|a|G|1792
*
8VOP|1|a|U|1827
8VOP|1|a|G|1828
8VOP|1|a|A|1829
8VOP|1|a|C|1830
*
8VOP|1|a|G|1975
8VOP|1|a|U|1976
8VOP|1|a|A|1977
8VOP|1|a|A|1978
8VOP|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2