J4_8VOP_015

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|G|2643
8VOP|1|a|G|2644
8VOP|1|a|G|2645
8VOP|1|a|C|2646
*
8VOP|1|a|G|2674
8VOP|1|a|A|2675
8VOP|1|a|C|2676
*
8VOP|1|a|G|2731
8VOP|1|a|G|2732
8VOP|1|a|A|2733
8VOP|1|a|A|2734
8VOP|1|a|G|2735
*
8VOP|1|a|U|2769
8VOP|1|a|G|2770
8VOP|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain t

50S ribosomal protein L14