3D structure

PDB id
8VOQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.3 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
8VOQ|1|a|A|2288, 8VOQ|1|a|G|2382
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8VOQ|1|a|C|2285
8VOQ|1|a|G|2286
8VOQ|1|a|A|2287
8VOQ|1|a|A|2288
8VOQ|1|a|G|2289
*
8VOQ|1|a|U|2343
8VOQ|1|a|U|2344
8VOQ|1|a|G|2345
8VOQ|1|a|A|2346
8VOQ|1|a|C|2347
*
8VOQ|1|a|G|2370
8VOQ|1|a|G|2371
8VOQ|1|a|U|2372
*
8VOQ|1|a|A|2381
8VOQ|1|a|G|2382
8VOQ|1|a|G|2383

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
50S ribosomal protein L27
Chain k
50S ribosomal protein L33
Chain o
50S ribosomal protein L35
Chain x
50S ribosomal protein L18

Coloring options:

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