J4_8VOR_006

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8VOR|1|a|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|a|C|268
8VOR|1|a|C|269
*
8VOR|1|a|G|370
8VOR|1|a|A|371
8VOR|1|a|G|372
8VOR|1|a|U|373
8VOR|1|a|A|374
8VOR|1|a|G|375
*
8VOR|1|a|U|399
8VOR|1|a|G|400
8VOR|1|a|A|401
8VOR|1|a|A|402
8VOR|1|a|U|403
8VOR|1|a|A|404
8VOR|1|a|U|405
8VOR|1|a|G|406
*
8VOR|1|a|C|421
8VOR|1|a|A|422
8VOR|1|a|A|423
8VOR|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9