J4_8VOR_008

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8VOR|1|a|U|653, 8VOR|1|a|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|a|C|601
8VOR|1|a|A|602
8VOR|1|a|A|603
8VOR|1|a|G|604
*
8VOR|1|a|C|624
8VOR|1|a|G|625
8VOR|1|a|A|626
8VOR|1|a|A|627
8VOR|1|a|G|628
*
8VOR|1|a|C|635
8VOR|1|a|G|636
8VOR|1|a|A|637
8VOR|1|a|G|638
*
8VOR|1|a|C|650
8VOR|1|a|G|651
8VOR|1|a|U|652
8VOR|1|a|U|653
8VOR|1|a|A|654
8VOR|1|a|A|655
8VOR|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15