J4_8VPK_004

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UC*GGUGAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

8VPK|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VPK_004 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.1792

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8VPK|1|A|U|1428
8VPK|1|A|C|1429
*
8VPK|1|A|G|1453
8VPK|1|A|G|1454
8VPK|1|A|U|1455
8VPK|1|A|G|1456
8VPK|1|A|A|1457
8VPK|1|A|G|1458
*
8VPK|1|A|C|1519
8VPK|1|A|C|1520
*
8VPK|1|A|G|1815
8VPK|1|A|C|1816
8VPK|1|A|C|1817
8VPK|1|A|C|1818
8VPK|1|A|G|1819
8VPK|1|A|U|1820
8VPK|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23