J4_8VPK_006

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VPK_006 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0786

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VPK|1|A|G|1989
8VPK|1|A|A|1990
8VPK|1|A|C|1991
8VPK|1|A|U|1992
8VPK|1|A|G|1993
*
8VPK|1|A|C|2005
8VPK|1|A|A|2006
8VPK|1|A|C|2007
8VPK|1|A|A|2008
8VPK|1|A|G|2009
*
8VPK|1|A|U|2044
8VPK|1|A|G|2045
8VPK|1|A|A|2046
8VPK|1|A|C|2047
*
8VPK|1|A|G|2199
8VPK|1|A|U|2200
8VPK|1|A|A|2201
8VPK|1|A|A|2202
8VPK|1|A|C|2203

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2