J4_8VRL_004

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8VRL|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VRL_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1183

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8VRL|1|A|G|1425
8VRL|1|A|G|1426
8VRL|1|A|U|1427
8VRL|1|A|U|1428
8VRL|1|A|C|1429
*
8VRL|1|A|G|1453
8VRL|1|A|G|1454
8VRL|1|A|U|1455
8VRL|1|A|G|1456
8VRL|1|A|A|1457
8VRL|1|A|G|1458
*
8VRL|1|A|C|1519
8VRL|1|A|C|1520
*
8VRL|1|A|G|1815
8VRL|1|A|C|1816
8VRL|1|A|C|1817
8VRL|1|A|C|1818
8VRL|1|A|G|1819
8VRL|1|A|U|1820
8VRL|1|A|A|1821
8VRL|1|A|C|1822

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23

Chain d

50S ribosomal protein L34