J4_8VRL_008
3D structure
- PDB id
- 8VRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 8VRL|1|A|A|2512
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VRL_008 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1325
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VRL|1|A|C|2509
8VRL|1|A|A|2510
8VRL|1|A|A|2511
8VRL|1|A|A|2512
8VRL|1|A|G|2513
*
8VRL|1|A|U|2567
8VRL|1|A|U|2568
8VRL|1|A|G|2569
8VRL|1|A|A|2570
8VRL|1|A|C|2571
*
8VRL|1|A|G|2594
8VRL|1|A|G|2595
8VRL|1|A|G|2596
*
8VRL|1|A|C|2605
8VRL|1|A|G|2606
8VRL|1|A|G|2607
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain P
- Large ribosomal subunit protein uL18
- Chain X
- 50S ribosomal protein L27
- Chain c
- 50S Ribosomal Protein L33
- Chain e
- 50S ribosomal protein L35
Coloring options: