J4_8VS9_001
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8VS9|1|16S|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VS9_001 not in the Motif Atlas
- Homologous match to J4_5J7L_001
- Geometric discrepancy: 0.2863
- The information below is about J4_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VS9|1|16S|G|115
8VS9|1|16S|A|116
8VS9|1|16S|G|117
8VS9|1|16S|U|118
8VS9|1|16S|A|119
8VS9|1|16S|A|120
8VS9|1|16S|U|121
8VS9|1|16S|G|122
*
8VS9|1|16S|U|239
8VS9|1|16S|G|240
*
8VS9|1|16S|C|286
8VS9|1|16S|U|287
8VS9|1|16S|A|288
8VS9|1|16S|G|289
*
8VS9|1|16S|C|311
8VS9|1|16S|C|312
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S16
- 30S ribosomal protein S16
- Chain S17
- Small ribosomal subunit protein uS17
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