3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
8VS9|1|16S|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8VS9_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2863
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8VS9|1|16S|G|115
8VS9|1|16S|A|116
8VS9|1|16S|G|117
8VS9|1|16S|U|118
8VS9|1|16S|A|119
8VS9|1|16S|A|120
8VS9|1|16S|U|121
8VS9|1|16S|G|122
*
8VS9|1|16S|U|239
8VS9|1|16S|G|240
*
8VS9|1|16S|C|286
8VS9|1|16S|U|287
8VS9|1|16S|A|288
8VS9|1|16S|G|289
*
8VS9|1|16S|C|311
8VS9|1|16S|C|312

Current chains

Chain 16S
16S ribosomal RNA

Nearby chains

Chain S16
30S ribosomal protein S16
Chain S17
Small ribosomal subunit protein uS17

Coloring options:


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