J4_8VS9_002

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8VS9|1|16S|C|183, 8VS9|1|16S|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VS9_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2375

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8VS9|1|16S|G|142
8VS9|1|16S|A|143
8VS9|1|16S|G|144
*
8VS9|1|16S|C|178
8VS9|1|16S|A|179
8VS9|1|16S|U|180
8VS9|1|16S|A|181
8VS9|1|16S|A|182
8VS9|1|16S|C|183
8VS9|1|16S|G|184
*
8VS9|1|16S|C|193
8VS9|1|16S|C|194
8VS9|1|16S|A|195
8VS9|1|16S|A|196
8VS9|1|16S|A|197
8VS9|1|16S|G|198
*
8VS9|1|16S|U|219
8VS9|1|16S|G|220
8VS9|1|16S|C|221

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S20

30S ribosomal protein S20