J4_8VS9_009

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*UU*AC*GC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VS9_009 not in the Motif Atlas

Homologous match to J4_5J7L_024

Geometric discrepancy: 0.1211

The information below is about J4_5J7L_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8VS9|1|23S|G|1444
8VS9|1|23S|G|1445
*
8VS9|1|23S|U|1466
8VS9|1|23S|U|1467
*
8VS9|1|23S|A|1525
8VS9|1|23S|C|1526
*
8VS9|1|23S|G|1546
8VS9|1|23S|C|1547

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains