J4_8VS9_013

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VS9_013 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1204

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8VS9|1|23S|G|2643
8VS9|1|23S|G|2644
8VS9|1|23S|G|2645
8VS9|1|23S|C|2646
*
8VS9|1|23S|G|2674
8VS9|1|23S|A|2675
8VS9|1|23S|C|2676
*
8VS9|1|23S|G|2731
8VS9|1|23S|G|2732
8VS9|1|23S|A|2733
8VS9|1|23S|A|2734
8VS9|1|23S|G|2735
*
8VS9|1|23S|U|2769
8VS9|1|23S|G|2770
8VS9|1|23S|C|2771

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L13

50S ribosomal protein L13

Chain L14

50S ribosomal protein L14