J4_8VSA_010

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VSA_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0716

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VSA|1|23S|A|1772
8VSA|1|23S|A|1773
8VSA|1|23S|C|1774
8VSA|1|23S|U|1775
8VSA|1|23S|G|1776
*
8VSA|1|23S|C|1788
8VSA|1|23S|A|1789
8VSA|1|23S|C|1790
8VSA|1|23S|A|1791
8VSA|1|23S|G|1792
*
8VSA|1|23S|U|1827
8VSA|1|23S|G|1828
8VSA|1|23S|A|1829
8VSA|1|23S|C|1830
*
8VSA|1|23S|G|1975
8VSA|1|23S|U|1976
8VSA|1|23S|A|1977
8VSA|1|23S|A|1978
8VSA|1|23S|U|1979

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2