J4_8VTU_023

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTU_023 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0452

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VTU|1|2A|G|1772
8VTU|1|2A|A|1773
8VTU|1|2A|C|1774
8VTU|1|2A|U|1775
8VTU|1|2A|G|1776
*
8VTU|1|2A|C|1788
8VTU|1|2A|A|1789
8VTU|1|2A|C|1790
8VTU|1|2A|A|1791
8VTU|1|2A|G|1792
*
8VTU|1|2A|C|1827
8VTU|1|2A|G|1828
8VTU|1|2A|A|1829
8VTU|1|2A|C|1830
*
8VTU|1|2A|G|1975
8VTU|1|2A|U|1976
8VTU|1|2A|A|1977
8VTU|1|2A|A|1978
8VTU|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA