J4_8VTV_023

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTV_023 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0469

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VTV|1|2A|G|1772
8VTV|1|2A|A|1773
8VTV|1|2A|C|1774
8VTV|1|2A|U|1775
8VTV|1|2A|G|1776
*
8VTV|1|2A|C|1788
8VTV|1|2A|A|1789
8VTV|1|2A|C|1790
8VTV|1|2A|A|1791
8VTV|1|2A|G|1792
*
8VTV|1|2A|C|1827
8VTV|1|2A|G|1828
8VTV|1|2A|A|1829
8VTV|1|2A|C|1830
*
8VTV|1|2A|G|1975
8VTV|1|2A|U|1976
8VTV|1|2A|A|1977
8VTV|1|2A|A|1978
8VTV|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA