3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAAAG*CUGAC*GGG*CGG
Length
16 nucleotides
Bulged bases
8VTV|1|2A|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8VTV_025 not in the Motif Atlas
Homologous match to J4_9DFE_009
Geometric discrepancy: 0.1026
The information below is about J4_9DFE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

8VTV|1|2A|C|2285
8VTV|1|2A|A|2286
8VTV|1|2A|A|2287
8VTV|1|2A|A|2288
8VTV|1|2A|G|2289
*
8VTV|1|2A|C|2343
8VTV|1|2A|U|2344
8VTV|1|2A|G|2345
8VTV|1|2A|A|2346
8VTV|1|2A|C|2347
*
8VTV|1|2A|G|2370
8VTV|1|2A|G|2371
8VTV|1|2A|G|2372
*
8VTV|1|2A|C|2381
8VTV|1|2A|G|2382
8VTV|1|2A|G|2383

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 26
50S ribosomal protein L33
Chain 28
50S ribosomal protein L35
Chain 2S
50S ribosomal protein L18

Coloring options:


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