J4_8VTV_028

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

8VTV|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTV_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1024

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8VTV|1|2a|G|142
8VTV|1|2a|A|143
8VTV|1|2a|G|144
*
8VTV|1|2a|C|178
8VTV|1|2a|A|179
8VTV|1|2a|U|180
8VTV|1|2a|G|181
8VTV|1|2a|U|182
8VTV|1|2a|G|183
*
8VTV|1|2a|C|194
8VTV|1|2a|A|195
8VTV|1|2a|A|196
8VTV|1|2a|A|197
8VTV|1|2a|G|198
*
8VTV|1|2a|C|219
8VTV|1|2a|G|220
8VTV|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20