J4_8VTW_022

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

8VTW|1|2A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTW_022 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.0582

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8VTW|1|2A|C|2285
8VTW|1|2A|A|2286
8VTW|1|2A|A|2287
8VTW|1|2A|A|2288
8VTW|1|2A|G|2289
*
8VTW|1|2A|C|2343
8VTW|1|2A|U|2344
8VTW|1|2A|G|2345
8VTW|1|2A|A|2346
8VTW|1|2A|C|2347
*
8VTW|1|2A|G|2370
8VTW|1|2A|G|2371
8VTW|1|2A|G|2372
*
8VTW|1|2A|C|2381
8VTW|1|2A|G|2382
8VTW|1|2A|G|2383

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2S

50S ribosomal protein L18