J4_8VTW_025

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

8VTW|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTW_025 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0843

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8VTW|1|2a|G|142
8VTW|1|2a|A|143
8VTW|1|2a|G|144
*
8VTW|1|2a|C|178
8VTW|1|2a|A|179
8VTW|1|2a|U|180
8VTW|1|2a|G|181
8VTW|1|2a|U|182
8VTW|1|2a|G|183
*
8VTW|1|2a|C|194
8VTW|1|2a|A|195
8VTW|1|2a|A|196
8VTW|1|2a|A|197
8VTW|1|2a|G|198
*
8VTW|1|2a|C|219
8VTW|1|2a|G|220
8VTW|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20