J4_8VTX_028

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTX_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0929

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

8VTX|1|2a|G|142
8VTX|1|2a|A|143
8VTX|1|2a|G|144
*
8VTX|1|2a|C|178
8VTX|1|2a|A|179
8VTX|1|2a|U|180
8VTX|1|2a|G|181
8VTX|1|2a|U|182
8VTX|1|2a|G|183
*
8VTX|1|2a|C|194
8VTX|1|2a|A|195
8VTX|1|2a|A|196
8VTX|1|2a|A|197
8VTX|1|2a|G|198
*
8VTX|1|2a|C|219
8VTX|1|2a|G|220
8VTX|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20