J4_8VUP_008

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8VUP|1|1|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|1|C|2285
8VUP|1|1|G|2286
8VUP|1|1|A|2287
8VUP|1|1|A|2288
8VUP|1|1|G|2289
*
8VUP|1|1|U|2343
8VUP|1|1|U|2344
8VUP|1|1|G|2345
8VUP|1|1|A|2346
8VUP|1|1|C|2347
*
8VUP|1|1|G|2370
8VUP|1|1|G|2371
8VUP|1|1|U|2372
*
8VUP|1|1|A|2381
8VUP|1|1|G|2382
8VUP|1|1|G|2383

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27

Chain c

50S ribosomal protein L33

Chain e

50S ribosomal protein L35