J4_8VVQ_008

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8VVQ|1|WA|A|2368, 8VVQ|1|WA|U|2371, 8VVQ|1|WA|U|2830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|C|2367
8VVQ|1|WA|A|2368
8VVQ|1|WA|A|2369
8VVQ|1|WA|A|2370
8VVQ|1|WA|U|2371
8VVQ|1|WA|A|2372
8VVQ|1|WA|U|2373
*
8VVQ|1|WA|A|2391
8VVQ|1|WA|G|2392
8VVQ|1|WA|G|2393
*
8VVQ|1|WA|C|2826
8VVQ|1|WA|A|2827
8VVQ|1|WA|U|2828
8VVQ|1|WA|G|2829
8VVQ|1|WA|U|2830
8VVQ|1|WA|U|2831
*
8VVQ|1|WA|A|3858
8VVQ|1|WA|G|3859

Current chains

Chain WA

28S rRNA

Nearby chains

Chain CA

L31

Chain O

uL22

Chain Q

eL19