J4_8VVQ_016
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8VVQ|1|ZA|A|672, 8VVQ|1|ZA|A|1083, 8VVQ|1|ZA|C|1085, 8VVQ|1|ZA|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVQ|1|ZA|A|671
8VVQ|1|ZA|A|672
8VVQ|1|ZA|G|673
*
8VVQ|1|ZA|C|1032
8VVQ|1|ZA|G|1033
8VVQ|1|ZA|A|1034
8VVQ|1|ZA|A|1035
8VVQ|1|ZA|A|1036
8VVQ|1|ZA|G|1037
*
8VVQ|1|ZA|C|1078
8VVQ|1|ZA|C|1079
8VVQ|1|ZA|A|1080
8VVQ|1|ZA|U|1081
8VVQ|1|ZA|A|1082
8VVQ|1|ZA|A|1083
8VVQ|1|ZA|A|1084
8VVQ|1|ZA|C|1085
8VVQ|1|ZA|G|1086
8VVQ|1|ZA|A|1087
8VVQ|1|ZA|U|1088
8VVQ|1|ZA|G|1089
*
8VVQ|1|ZA|U|1160
8VVQ|1|ZA|U|1161
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain AC
- S26
- Chain LB
- S11
- Chain MA
- eL41
- Chain NB
- uS15
- Chain OA
- eL43
- Chain OB
- S14
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
- Chain WB
- S15A
- Chain XB
- S23
Coloring options: