J4_8VVT_004

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8VVT|1|WA|A|2371, 8VVT|1|WA|U|2374, 8VVT|1|WA|U|2833

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|OMC|2370
8VVT|1|WA|A|2371
8VVT|1|WA|A|2372
8VVT|1|WA|A|2373
8VVT|1|WA|U|2374
8VVT|1|WA|A|2375
8VVT|1|WA|U|2376
*
8VVT|1|WA|A|2394
8VVT|1|WA|G|2395
8VVT|1|WA|G|2396
*
8VVT|1|WA|C|2829
8VVT|1|WA|A|2830
8VVT|1|WA|U|2831
8VVT|1|WA|G|2832
8VVT|1|WA|U|2833
8VVT|1|WA|U|2834
*
8VVT|1|WA|A|3861
8VVT|1|WA|G|3862

Current chains

Chain WA

28S rRNA

Nearby chains

Chain CA

eL31

Chain O

uL22

Chain Q

eL19