J4_8VVU_011

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|WA|G|3636
8VVU|1|WA|A|3637
8VVU|1|WA|C|3638
8VVU|1|WA|U|3639
8VVU|1|WA|G|3640
*
8VVU|1|WA|C|3652
8VVU|1|WA|A|3653
8VVU|1|WA|A|3654
8VVU|1|WA|A|3655
8VVU|1|WA|G|3656
*
8VVU|1|WA|U|3692
8VVU|1|WA|G|3693
8VVU|1|WA|A|3694
8VVU|1|WA|U|3695
8VVU|1|WA|U|3696
*
8VVU|1|WA|A|3823
8VVU|1|WA|U|3824
8VVU|1|WA|G|3825
8VVU|1|WA|A|3826
8VVU|1|WA|A|3827
8VVU|1|WA|C|3828

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain MA

eL41

Chain OA

eL43

Chain ZA

Small subunit ribosomal RNA; SSU rRNA