J4_8VVU_012

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8VVU|1|WA|U|3820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|WA|C|3698
8VVU|1|WA|U|3699
8VVU|1|WA|G|3700
*
8VVU|1|WA|C|3754
8VVU|1|WA|G|3755
*
8VVU|1|WA|C|3773
8VVU|1|WA|U|3774
8VVU|1|WA|U|3775
8VVU|1|WA|A|3776
8VVU|1|WA|A|3777
8VVU|1|WA|G|3778
8VVU|1|WA|G|3779
8VVU|1|WA|U|3780
8VVU|1|WA|A|3781
8VVU|1|WA|G|3782
*
8VVU|1|WA|U|3816
8VVU|1|WA|G|3817
8VVU|1|WA|A|3818
8VVU|1|WA|A|3819
8VVU|1|WA|U|3820
8VVU|1|WA|G|3821

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain MA

eL41

Chain SA

Transfer RNA; tRNA

Chain ZA

Small subunit ribosomal RNA; SSU rRNA